PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G147300.2
Common NameB456_009G147300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 344aa    MW: 37764.9 Da    PI: 4.3147
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G147300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.81.3e-08971232955
                 AP2  29 krfslgkfgtaeeAakaaiaarkkleg 55 
                          r++lg+f taeeAa+a++  +++++g
  Gorai.009G147300.2  97 VRVWLGTFNTAEEAARAYDSEARRIRG 123
                         79**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.74770131IPR001471AP2/ERF domain
SMARTSM003805.9E-1088137IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1194133IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-1795132IPR001471AP2/ERF domain
CDDcd000181.56E-1696132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MCGGAIISDF IAPVRSRRLT ADYLWPDLRK SQSKKASSNR YSKPAIDFTD NFEADFQDFK  60
DDKSDIEDYD VDDVLADAKP FAFSAAKKAS STVSHGVRVW LGTFNTAEEA ARAYDSEARR  120
IRGKKAKVNF PDEMPRTSPK RVIKTNDEKP LPMSNLSPVE PNINQNFNCL NKPEQVFYDT  180
MGFVEEKAPM DPFAYVDTVP AAVDVGLKPF GQSDNTPLYF SSDQGSTSFD CSDFGWGEHG  240
AKTPEISSAL EATMEGDDFL VDANPKKKLK PSSENVMPIE DNSAESLSDE LLALGDQMKY  300
PFLEGNWDAT LDALLNGDAS QYGGALTDLW SFGDFPAVAG GHF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.27560.0flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487912520.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3725771e-138DQ372577.1 Gossypium hirsutum isolate vdrg18 disease resistance-related mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445270.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X2
TrEMBLA0A0D2QGG00.0A0A0D2QGG0_G
STRINGVIT_09s0002g00470.t011e-102(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-33related to AP2 12
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]